PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022546

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HSF

Protein Properties

Length: 494aa MW: 55069.2 Da PI: 5.9108

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022546	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	100.5	1.6e-31	23	121	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH........HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk........yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl k+y++++d ++++++sws+++nsfvv+d+ efa+++L+ yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F kg+ Lus10022546 23 FLIKTYDMVDDMSTDDIVSWSSSNNSFVVWDPPEFARRLLTAfarrllpaYFKHNNFSSFIRQLNTYGFRKSDPER---------WEFSNEEFIKGQ 110 9*****************************999877664333344444*****************99988.........******** PP XXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkk 101 k+ll++i+r+k Lus10022546 111 KHLLKNIHRRK 121 *******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.3E-54	19	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.9E-35	20	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.79E-31	20	120	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.4E-28	23	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MESAIPTSTT AAGGGGGVGT APFLIKTYDM VDDMSTDDIV SWSSSNNSFV VWDPPEFARR 60 LLTAFARRLL PAYFKHNNFS SFIRQLNTYG FRKSDPERWE FSNEEFIKGQ KHLLKNIHRR 120 KPIHSHSHPQ VSSDPERAAF DEEIERLSRE KAQLQASLVR CEKERSCEKV QLEDLTHRVD 180 NLVERQVSLL SFLEKSVQNP AFVKLLIDKI EAMDVSSYSK KRRLPQLEES RPVVIENNAL 240 YCSSRPEFGN VIHQDFSSKL RLELSPAVSD INLFSHSTQS SNDDGTSLQG MFSGPEPRDA 300 ASLRTPGMLF SAPETLDLSD TGTSCTFKAD SAFPRKVAAS ERLGLLSLQP NSDSNDEGDG 360 HISCLLNLSL ASCSLQINKS QSSKVAHEGQ EMTTSPELRS SVKDTECDTR TILRNPSMSI 420 DEKPHIAPAP NKNGPPGRVN DVFWEQFLTE QPGSSGNEEA SSHYRANPYD EQEDRRSGHG 480 LSRNNRSMEQ LSL*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MESAIPTSTT AAGGGGGVGT APFLIKTYDM VDDMSTDDIV SWSSSNNSFV VWDPPEFARR  60
LLTAFARRLL PAYFKHNNFS SFIRQLNTYG FRKSDPERWE FSNEEFIKGQ KHLLKNIHRR  120
KPIHSHSHPQ VSSDPERAAF DEEIERLSRE KAQLQASLVR CEKERSCEKV QLEDLTHRVD  180
NLVERQVSLL SFLEKSVQNP AFVKLLIDKI EAMDVSSYSK KRRLPQLEES RPVVIENNAL  240
YCSSRPEFGN VIHQDFSSKL RLELSPAVSD INLFSHSTQS SNDDGTSLQG MFSGPEPRDA  300
ASLRTPGMLF SAPETLDLSD TGTSCTFKAD SAFPRKVAAS ERLGLLSLQP NSDSNDEGDG  360
HISCLLNLSL ASCSLQINKS QSSKVAHEGQ EMTTSPELRS SVKDTECDTR TILRNPSMSI  420
DEKPHIAPAP NKNGPPGRVN DVFWEQFLTE QPGSSGNEEA SSHYRANPYD EQEDRRSGHG  480
LSRNNRSMEQ LSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-21	10	120	16	129	Heat shock factor protein 1
5d5v_B	9e-21	10	120	16	129	Heat shock factor protein 1
5d5v_D	9e-21	10	120	16	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022546

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021290087.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290088.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290089.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290090.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290092.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-150	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9S9Y4	0.0	B9S9Y4_RICCO; DNA binding protein, putative
STRING	Lus10022546	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-127	HSF family protein

Link Out ? help Back to Top
Phytozome	Lus10022546

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]