PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022558

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

FAR1

Protein Properties

Length: 169aa MW: 18630 Da PI: 8.2019

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022558	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.5	4.2e-08	41	116	7	80
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 A ++GF++++ ++kk+ ++e ++ ++Cs gk +++ ++++k++rt+++ gC+ ++ v+ ++ kw+++ Lus10022558 41 ALDLGFQLTRGSHKKN-PSEEEKRLYLYCSHGGKCKSQPTASSKSSRTTTTPYSGCTFMVCVRSRRvdaGWKWRIDP 116 7889******9999.5556789999**********99******************99884455677765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-5	41	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MTGALEVTVW NAATEFNYLS VIPFVREVIV DDTCDAAKDI ALDLGFQLTR GSHKKNPSEE 60 EKRLYLYCSH GGKCKSQPTA SSKSSRTTTT PYSGCTFMVC VRSRRVDAGW KWRIDPVKDD 120 VKEGFLGPST TTSLRRRERA ARSGAGEAAA EGECFQRWEC FPRGESCG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022558

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10022558	1e-122	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13554	2	4

Link Out ? help Back to Top
Phytozome	Lus10022558