PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022594
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 163aa    MW: 17992.4 Da    PI: 8.216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022594genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.3e-156441250
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ++ kRr ++ KKAeELS+LC+++va + f ++g++ +++
  Lus10022594  6 SLKKRRRTLKKKAEELSTLCGIDVAYVCFEPNGRVDTWP 44
                 899***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.736547IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-14662IPR002100Transcription factor, MADS-box
PfamPF003192.9E-14643IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-5924IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-52445IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MFPTLSLKKR RRTLKKKAEE LSTLCGIDVA YVCFEPNGRV DTWPEDPIKV KDIILKYNVL  60
KSNHTLSSSS AASSSGTTHN DIGGRDIGEL ESLRLRINEF SQEELAEVLK LADRKLERLR  120
EEIASLESNG ETSTRKRLAG GELKTANFID LVGLSTETGQ KA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016RRTLKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100225941e-114(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.19e-09AGAMOUS-like 103