PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022914
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 160aa    MW: 17912.6 Da    PI: 9.6776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022914genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.52e-1771302128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlskkg 97 
                  p+G+rF+P+ e+++ eyL  kv+g++l+   vi + d+y  +   ++   +++ +e+yf +k  kk+++ g r  r + ++g+W +  +dk+v++ +g
  Lus10022914   7 PVGYRFRPSGEQVI-EYLVDKVKGNTLPS--VIFDGDLYGEDEVWIRLFSETNASELYFCTKLPKKKKKgGIRVARtVGTKGTWTS-SQDKPVYT-RG 99 
                  89************.***********988..899******99998985556677899999998888776478999*55669***96.578*****.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   ++g k+++ + +++++ +   + vm+eyrl
  Lus10022914 100 VHIGSKRSFSYQEKEKSAAGGLRFVMDEYRL 130
                  9***********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-183151IPR003441NAC domain
PROSITE profilePS5100519.5966151IPR003441NAC domain
PfamPF023659.4E-127130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRIPGAPVGY RFRPSGEQVI EYLVDKVKGN TLPSVIFDGD LYGEDEVWIR LFSETNASEL  60
YFCTKLPKKK KKGGIRVART VGTKGTWTSS QDKPVYTRGV HIGSKRSFSY QEKEKSAAGG  120
LRFVMDEYRL DGVLGEHPEA AEVVICCVRK KVESNLYRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100229141e-114(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-08NAC domain containing protein 25