PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022926
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 546aa    MW: 63753.9 Da    PI: 8.8758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022926genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07339374341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                      +WT+e+ el  +++++ G++ Wk  a  mg  + + ++k
      Lus10022926 339 KWTEEDRELVMKYHEKCGTN-WKPLADAMG--KHRHHVK 374
                      8*****************99.********9..5566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2262334IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4300353IPR009057Homeodomain-like
SMARTSM007170.71336383IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-7338395IPR009057Homeodomain-like
PROSITE profilePS500905.436339381IPR017877Myb-like domain
PfamPF139218.5E-9340396No hitNo description
Gene3DG3DSA:1.10.10.604.3E-6354389IPR009057Homeodomain-like
PROSITE profilePS500907.375382450IPR017877Myb-like domain
SMARTSM007170.38386452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-6390451IPR009057Homeodomain-like
SuperFamilySSF466891.23E-6430513IPR009057Homeodomain-like
PROSITE profilePS500906.713452505IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVNGEAGSTE FVSRMDKGNS KKKRKRVKGD NLVDSSSLIG LSEVEHGVGS LNRIEVGNFD  60
SPNERRKKKK KKREKHGNDQ EVMDHELGEV MNENSESQKE EKKKKKKKKE KEKKKQQVEE  120
KKQEKTKEEE REEEKKKKKK EEEGEEEKKK KKKKKDKKKK QLIVQEPVLL ENSVGDDEAT  180
TKELENTEYS IDRTKDKKRK TKTQTNDVGK RVEINSAATD ALDSSPPKST PDRVSSAEDE  240
EVLPNSDDSN DETASKDKEL VRGKRFSPEE DKLVQAACWD YVNSKGLGDE EGIQMIMNCR  300
KHKKLRNCWM EICAAIPWRP HESVRYRAHI LFERDSTRKW TEEDRELVMK YHEKCGTNWK  360
PLADAMGKHR HHVKDAFRRM KLKNLNSGRW SQDEYQAFYE LVNTDLRMKA FGERKSKHGM  420
LRDNISWTAI SDKLDTRTFA SCCEKWYKQL ASPMVAQQQW LDTDDYLLVN ELYTLDACCM  480
EDVDWDCLLE HRTGDVCRKR WNEMVKHLGE GRNKSFSEQV EILAKRYTPD VLEAREAYYS  540
KPVVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369ERRKKKK
26470RRKKKKK
36573RKKKKKKRE
46574RKKKKKKREK
5101114KKKKKKKKEKEKKK
6137159KKKEEEGEEEKKKKKKKKDKKKK
7148154KKKKKKK
8149157KKKKKKDKK
9150159KKKKKDKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8883448e-85HQ888344.1 Linum usitatissimum clone GMU2AYZ01AML72 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628039.11e-152RNA polymerase I termination factor-like isoform X1
RefseqXP_021628040.11e-154RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2C9V1G51e-152A0A2C9V1G5_MANES; Uncharacterized protein
TrEMBLA0A2C9V1K81e-151A0A2C9V1K8_MANES; Uncharacterized protein
STRINGLus100229260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-117MYB_related family protein