PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022932
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 195aa    MW: 23158.5 Da    PI: 10.5384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022932genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08124164346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE el +++++++G + W+t a  +g  + + ++k+ ++ 
      Lus10022932 124 KWTEEECELVLKYHEKYGAE-WRTLAYALG--KHRHHVKDVFRR 164
                      8*******************.*******98..677888876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172967119IPR001005SANT/Myb domain
SMARTSM007170.022121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6122160IPR009057Homeodomain-like
SuperFamilySSF466899.79E-8123179IPR009057Homeodomain-like
PfamPF139217.2E-9125179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MLRIEVDHGV GSLNRIEVEN SSSSHERRRR KKKKKKKKKK KKRKKHANGD EVMNEDLGDG  60
ENKELVRGKR FSLEEEKLVE AACWEKHKQV SNCWKQICAV IPWRPHESVC CRAHILFERG  120
ETRKWTEEEC ELVLKYHEKY GAEWRTLAYA LGKHRHHVKD VFRRLKLRNR NSGHWSQDDQ  180
KTKHYRISRN AGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834RRKKKKK
23044KKKKKKKKKKKKRKK
33144KKKKKKKKKKKRKK
43244KKKKKKKKKKRKK
53544KKKKKKKRKK
63644KKKKKKRKK
73843KKKKRK
83844KKKKRKK
94044KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529443.23e-39uncharacterized protein LOC8264879
TrEMBLA0A2C9V1G51e-37A0A2C9V1G5_MANES; Uncharacterized protein
TrEMBLA0A2C9V1K81e-37A0A2C9V1K8_MANES; Uncharacterized protein
TrEMBLB9STX41e-37B9STX4_RICCO; DNA binding protein, putative
STRINGLus100229321e-138(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-30MYB_related family protein