PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022935
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 314aa    MW: 33733.2 Da    PI: 6.1709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-18126175355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f+t+e Aa a+++a+ + +g
  Lus10022935 126 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTPEAAAMAYDQAAFAVRG 175
                  9*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-12124175IPR001471AP2/ERF domain
SMARTSM003808.9E-37125189IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22125185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-29125184IPR001471AP2/ERF domain
PROSITE profilePS5103223.182125183IPR001471AP2/ERF domain
CDDcd000182.23E-19126185No hitNo description
PRINTSPR003673.7E-10126137IPR001471AP2/ERF domain
PRINTSPR003673.7E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METSTFRYTF NHFPKPEFDS DYNYDSSSFA TSSSFSSWDD LLTIPPYSDF PHFHNTAAPA  60
IEEEMMMTPP GRGGGGGGGA RTSEYSNNSG SSSVSVGTKL EEDATSDDAA TAAAKSSSFS  120
TTTPAYRGVR KRPWGKFAAE IRDSTRNGVR VWLGTFDTPE AAAMAYDQAA FAVRGTTAVL  180
NFPVDAVRES LETMKMSGGG GRTGQEEGDD DSGTGVSPVL ALKRRNSVRR RTTAAEKKGK  240
REKKRPASAA AGEKGLEVNR IQHKIGKSEK IVSSSSSNNK NVVVLEDLGV DYLDELLKVC  300
MQDTSQISSL LPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-25126184664ATERF1
3gcc_A3e-25126184664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229245RRTTAAEKKGKREKKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100229350.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.17e-31octadecanoid-responsive Arabidopsis AP2/ERF 59