PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023027
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 213aa    MW: 24086.8 Da    PI: 6.9022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-081854147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed+ll          +W+ I+ +++ gRt++++k++w+++
      Lus10023027 18 KGAWSQDEDKLLR---------RWAFISGRLP-GRTANDVKNYWNTH 54
                     5777777777774.........4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7151359IPR017930Myb domain
SuperFamilySSF466892.5E-101361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-111557IPR009057Homeodomain-like
SMARTSM007173.3E-61757IPR001005SANT/Myb domain
CDDcd001673.18E-82054No hitNo description
PfamPF002499.2E-63154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAGGGSEMV VKSVGLRKGA WSQDEDKLLR RWAFISGRLP GRTANDVKNY WNTHQKKLVT  60
KTFRFKPEHI IHHNSSSKVR SMQITKTNII KPRPWTFSSK SFTWARKTTT ETPNPIIVTN  120
KPLVVINSDE SIKRGDDHHT SSGEGEISTW VDSLKRLLDD EVGVNDNDNE KQPVETNENQ  180
PLEPTSNDDY DSSLWTDIDI QHLLGDYSGN LI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100230271e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-14myb domain protein 113