PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023332
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 120aa    MW: 14049 Da    PI: 10.4408
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.18.1e-152501457
                 HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Lus10023332  2 ILEELYRSgVRTPNASHIQRITAHLsmygKIEGKNVFYWFQNHKARDRQ 50
                 8******99*************************************996 PP
2Wus_type_Homeobox95.25.7e-311511464
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLeely+sG+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk
        Lus10023332  1 MILEELYRSGVRTPNASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQK 51
                       69************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.313151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-4250IPR009057Homeodomain-like
PfamPF000461.6E-12250IPR001356Homeobox domain
SuperFamilySSF466898.76E-7251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MILEELYRSG VRTPNASHIQ RITAHLSMYG KIEGKNVFYW FQNHKARDRQ KLRRKLIKQL  60
HQHQPQHLPS YDHLQNQSSS INNNSFLLNY FGYAPTPPHP PPHRPLHQGD DWFVLLGFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046418.11e-34PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A059D5E35e-33A0A059D5E3_EUCGR; Uncharacterized protein
TrEMBLA0A2C9V2A33e-33A0A2C9V2A3_MANES; Uncharacterized protein (Fragment)
STRINGLus100233326e-84(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-32WOX family protein