PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023357
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 868aa    MW: 94881.6 Da    PI: 6.7485
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023357genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-183997357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lus10023357 39 KYVRYTPEQVEALERVYAECPKPTSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 97
                 6789*****************************************************97 PP
2START162.14e-511893942204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+ ++ ++   +e+l+ +  W ++++ +e+ +vi +g  g+++l++++
  Lus10023357 189 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLTEALQV---AEILKERTTWYRDCRFVEMANVIPTGngGTIELIYMQ 283
                  68999**********************************************9876555...88888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p    ss++vRa++lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + 
  Lus10023357 284 TYAPTTLAAaRDFWTIRYTTTLEDGSLVICERSLTSSTGGPPgppSSGFVRAKMLPSGYLIRPCEGGGSIIHIVDHVDLDPSSVPEVLRPLYESSKII 381
                  *************************************99888899***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k+++a+l++ +
  Lus10023357 382 AQKMTLAALRHIR 394
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-182597IPR009057Homeodomain-like
PROSITE profilePS5007115.6453498IPR001356Homeobox domain
SMARTSM003891.8E-1536102IPR001356Homeobox domain
SuperFamilySSF466893.89E-1639101IPR009057Homeodomain-like
PfamPF000466.1E-163997IPR001356Homeobox domain
CDDcd000862.48E-163999No hitNo description
CDDcd146862.09E-691130No hitNo description
PROSITE profilePS5084825.731179405IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-18188378IPR023393START-like domain
SMARTSM002343.5E-46188396IPR002913START domain
PfamPF018528.4E-49189394IPR002913START domain
SuperFamilySSF559617.83E-32189398No hitNo description
SuperFamilySSF559611.32E-7434518No hitNo description
SuperFamilySSF559611.32E-7546674No hitNo description
PfamPF086707.5E-49722866IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MALSMYHHNN NTNQLNNEGG LMLLNKNHHN QQQQMDTSKY VRYTPEQVEA LERVYAECPK  60
PTSLKRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME  120
ENDRLQKQVS HLVYDNGFMR QQLHSGSATA TDNSCESVVM SGQQQQQQQN PSSQHSQRDA  180
NNPAGLLAIA EETLAEFLSK ATGTAVNWVQ MIGMKPGPDS IGIVAVSRNS SGVAARACGL  240
TEALQVAEIL KERTTWYRDC RFVEMANVIP TGNGGTIELI YMQTYAPTTL AAARDFWTIR  300
YTTTLEDGSL VICERSLTSS TGGPPGPPSS GFVRAKMLPS GYLIRPCEGG GSIIHIVDHV  360
DLDPSSVPEV LRPLYESSKI IAQKMTLAAL RHIRQIAQES SGEIQYGGGR QPAVLRTFSQ  420
RLCRGFNDAV NGFADDGWSL LSGDGVDDVT IAINSSPNKA LGSQYNGMFP TFGGGVLCAR  480
ASMLVQNVPP ALLVRFLREH RSEWADCAVD AYSAACLKSS PYAVPCGRPG GFPSSQVILP  540
LAHTVEHEEF LEVVRLEAQA FSPEEMALAR DMYLLQLCSG VDENAVGACA QLVFAPIDES  600
FADDAPLLPS GFRVIPLDSK ADGHGATRTL DLASTLEVGA GCGSRSAAQS DSNGHNLRSV  660
LTMAFQFSFE NHLRDNVAAM ARQYVRSVVA SVQRVATAIA PSRIGAQVGG GKSLPGTPEA  720
QTLARWIYRS FRAHTGRDLF NGDPESGDAL LKQLWHNSDS IMCCSLKTNA SPVFTFANQA  780
GLDMLETTLV ALQDIMLDKI LDEAGRKILF SEFSKIMHQG YAYLPSGVCV SSMGRTVSYD  840
QAIAWKVVND DGSNHCLAFM FVNWSFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616343.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2C9VN670.0A0A2C9VN67_MANES; Uncharacterized protein
STRINGLus100233570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]