PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023358
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 179aa    MW: 19512.9 Da    PI: 10.2355
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.5e-3280136158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh hAl+R+Rg+gGrF
  Lus10023358  80 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHIHALKRARGCGGRF 136
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.6E-3678139IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.16379139IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.9E-2781136IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-2382104IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686084104IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-23113136IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAHSAVATGN IPFSTAPLLG AGQAMVPQGY PYPDPYYRSI FPPYDSQQYA PQPYGGQPMV  60
HVQLMGLQQG GMPLPSDAVE EPVFVNAKQY HGILRRRQSR AKAESENKAI KSRKPYLHES  120
RHIHALKRAR GCGGRFLNSK KNEDKQVAKS NTASGDKSES NINLNSDRSD TASSKGKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2179143165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847860.17e-95PREDICTED: nuclear transcription factor Y subunit A-7
RefseqXP_018847861.17e-95PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP15e-62NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2I4GVD22e-93A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7
STRINGLus100233581e-130(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-60nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]