PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023428
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 363aa    MW: 40762.1 Da    PI: 7.2172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000371812191154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  rR +++ +++  L++l+ +      +K + a++Le+A  +Ik L
  Lus10023428 181 RRSQKMSDKITALQKLVSPY-----GKTDTASVLEEASLCIKLL 219
                  7999**************99.....9************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.534170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-6181226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF557531.19E-44220360No hitNo description
PROSITE profilePS5126338.639228362IPR002108Actin-depolymerising factor homology domain
CDDcd112862.85E-65229360No hitNo description
Gene3DG3DSA:3.40.20.104.2E-46229360IPR029006ADF-H/Gelsolin-like domain
SMARTSM001027.9E-57235362IPR002108Actin-depolymerising factor homology domain
PfamPF002414.5E-36237359IPR002108Actin-depolymerising factor homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0003779Molecular Functionactin binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGFLRFVGNN STSTTTTTDQ VMRMMPCSEN TMPIDSMRNL DAADASFCWD SMAFSDYNYQ  60
LDPPLHHQPS FFSSYDHQQF SAAGSEYVPF SSGYDTVSSQ SSPVLPLVAN PHVNLGLNSR  120
QQVMRKRPSE VSSMAMKGTG KRKKSSPNAI SADVGALHQY EQMNRPSITL QEIKGAQMPV  180
RRSQKMSDKI TALQKLVSPY GKTDTASVLE EASLCIKLLH NHIQANAASG MAVHDDCKLK  240
FLELKAKRTY RYIVYKIEEQ QKQVIVEKLG EPTDSYEDFS ASLPADECRY AVYDFDYVTE  300
DNRQISRIIF VAWSPDTARV RSKMIYASSK DRFKRELDGI QIELQATDPT EMGLDVIKSR  360
TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f7s_A3e-782253612138ACTIN DEPOLYMERIZING FACTOR (ADF)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124143RKRPSEVSSMAMKGTGKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310792.11e-107actin-depolymerizing factor 1-like
TrEMBLA0A2P5WK301e-110A0A2P5WK30_GOSBA; Uncharacterized protein
STRINGLus100234280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-10bHLH family protein