PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023433
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 192aa    MW: 20661.5 Da    PI: 8.8598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023433genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00124466123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ Fs+   L  H  +H
  Lus10023433 44 FECKTCNRQFSSFQALGGHRASH 66
                 89**********99999998887 PP
2zf-C2H212.40.0004698120123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  Fs    L  H+r+H
  Lus10023433  98 HQCSVCGLEFSVGQALGGHMRRH 120
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-84266No hitNo description
PfamPF139121.3E-114368IPR007087Zinc finger, C2H2
SMARTSM003550.24466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5564466IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-893120No hitNo description
PfamPF139127.0E-1097122IPR007087Zinc finger, C2H2
PROSITE profilePS501579.36998125IPR007087Zinc finger, C2H2
SMARTSM003550.09298120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNMQETIGEI LNLTVANCLV LLSRQPRYDI VVSERGSSSP SRVFECKTCN RQFSSFQALG  60
GHRASHKKHP LPTGCSEGSL KVGGHLEKQV LPTMPKAHQC SVCGLEFSVG QALGGHMRRH  120
RAASDLPVVA TTVTSGGGSN GGSEESSENP TLRMKRARVL SLDLNLTPYE NDVKLLKLGT  180
NHNASMVDFF N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023433
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027131.13e-48PREDICTED: zinc finger protein ZAT11-like
RefseqXP_020537954.13e-48zinc finger protein ZAT12-like
SwissprotQ681X44e-29ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A067KDD38e-47A0A067KDD3_JATCU; Uncharacterized protein
STRINGLus100234331e-139(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-32C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]