PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023561

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WOX

Protein Properties

Length: 234aa MW: 25824.3 Da PI: 6.1522

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023561	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.5	8.5e-22	108	168	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l +++e++V++WFqNrRa+ k+ Lus10023561 108 RQRWTPTPVQLQILEQIFEQgNGTPTKQKIKEITTQLsqhgQISETNVYNWFQNRRARSKR 168 89***************99************************************97 PP
2	Wus_type_Homeobox	101.8	5e-33	108	170	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it++L+++G+i+++NV++WFQNr+aR+++kq Lus10023561 108 RQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTQLSQHGQISETNVYNWFQNRRARSKRKQ 170 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-20	103	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.046	104	169	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.3E-18	105	172	IPR009057	Homeodomain-like
SMART	SM00389	7.8E-15	106	173	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-19	108	168	IPR001356	Homeobox domain
CDD	cd00086	2.08E-14	108	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEWDSTAVGS NHKRHHESCN NNNNGDPNTA NSSSSPNDLL YVKVMTDEQL ETLRKQIAVY 60 STICEQLVEM HKTLSSSHQD FAAAGRLGNM YLDTLMGGGG GQKLSGGRQR WTPTPVQLQI 120 LEQIFEQGNG TPTKQKIKEI TTQLSQHGQI SETNVYNWFQ NRRARSKRKQ HLTNLPTSAA 180 AGTNNNDNAG ATSGDLSSEV ETTTATEVDS LNDQDIIIQL LAQSQYQEKQ CWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023561

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036364.1	2e-74	WUSCHEL-related homeobox 13 isoform X2
Swissprot	Q5QMM3	4e-64	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A067G7G2	2e-73	A0A067G7G2_CITSI; Uncharacterized protein
STRING	Lus10023561	1e-174	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-63	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Lus10023561

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]