PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023564
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 87aa    MW: 9519.73 Da    PI: 5.845
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023564genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-071255444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT+ E +l+ +a +++ ++   +W  +a+ +g g++++++k+ +
      Lus10023564 12 WTARENKLFEEALALHDKDtpdRWINVANAVGSGKSAEEVKLQY 55
                     *****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-5861IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-111167IPR009057Homeodomain-like
PfamPF002494.1E-61255IPR001005SANT/Myb domain
CDDcd001673.32E-51255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSNNGLACT LWTARENKLF EEALALHDKD TPDRWINVAN AVGSGKSAEE VKLQYDILVA  60
DVARIESGRV PIPEYRTGTP KLASRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-25177175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310812.13e-30protein RADIALIS-like 3
SwissprotQ1A1733e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A482DHU11e-29A0A482DHU1_9ASPA; RADIALIS 1 (Fragment)
STRINGLus100235646e-58(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-30RAD-like 6