PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023591

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 159aa MW: 17926.7 Da PI: 6.5016

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023591	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	32.8	2e-10	8	113	1	98
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer........edamsslvyeAearardPvyGavgvilklqqqleq 89 +C+ Ck+ r+ +C+++C+++ fp e +f+ v l+G + + l +++++ ++ ++sl+ + r ++ v G+ g i+ l+ + ++ Lus10023591 8 RCQKCKYSRKaECPDGCPFRDFFPPEG-DNFQQVIGLYGKGTSSALSHQMDQLPPtlfpnfhnNAYFNSLTVDGGLRRDNRVVGSSGNIQVLEMERHH 104 6*******99********987.89*****988877777763333233355555999************************999988 PP DUF260 90 lkaelallk 98 lk+ ++ + Lus10023591 105 LKQGQQYFQ 113 887666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.702	7	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-10	8	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MAHQGAQRCQ KCKYSRKAEC PDGCPFRDFF PPEGDNFQQV IGLYGKGTSS ALSHQMDQLP 60 PTLFPNFHNN AYFNSLTVDG GLRRDNRVVG SSGNIQVLEM ERHHLKQGQQ YFQNEANLAH 120 AQNAILSAAN EELVYENNWF RNQHPDENPP PFHDPGNQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023591

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10023591	1e-116	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-10	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Lus10023591