PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023610
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 97aa    MW: 10936.5 Da    PI: 11.192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023610genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-0822601754
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  +   +L++llP+ + + +s K+s a +L+++++YI+sL
  Lus10023610 22 LDLVTKLQQLLPElRNRRRSDKVSAANVLQETCNYIRSL 60
                 566679*******777*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.531560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-8574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-82082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-52160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSSRRSRTRS SGSSRITDDQ ILDLVTKLQQ LLPELRNRRR SDKVSAANVL QETCNYIRSL  60
HREVDDLSER LSGLLATTDS XXXRPSRSHS QLTQLA*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736077.13e-39transcription factor PRE3-like
SwissprotQ9LJX11e-31PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4DG946e-36A0A2I4DG94_JUGRE; transcription factor PRE3-like
TrEMBLA0A2I4DMW15e-36A0A2I4DMW1_JUGRE; transcription factor PRE3-like
STRINGLus100236102e-57(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.12e-31activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1