PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023636
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 307aa    MW: 34631.7 Da    PI: 8.3867
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023636genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.9e-35261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ ++F +g+k+ll+++ 
   Lus10023636  26 FVMKTYQMVNDPSTDSLISWGKANNSFIVVDPLDFSRRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFASEWFLRGQKQLLRNVV 113
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ +
   Lus10023636 114 RRPK 117
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-5122115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2926115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDENTRSHSG DDYNINTNNN NVIAPFVMKT YQMVNDPSTD SLISWGKANN SFIVVDPLDF  60
SRRILPVYFK HNNFSSFVRQ LNTYGFRKVD PDKWEFASEW FLRGQKQLLR NVVRRPKQLS  120
KSGTRSLNSI DDLVESNEEM AVEIGRMKLD QRALEKQIEG MSKRLEATER RPEQMMAFLY  180
KVVDDPDLLP RMMMTRRKLD HRKKRCLMTS ISSENSSSPS TSTSGVATTS AQGSIKSEDE  240
IYMSSPENGF GRVQSSSPER SPEQHGWFIG EISSGRFGDG GKSYDYGGTA VESSPGYPFS  300
LFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252311526129Heat shock factor protein 1
5d5v_B1e-252311526129Heat shock factor protein 1
5d5v_D1e-252311526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324418.21e-100heat stress transcription factor C-1
SwissprotQ9LV525e-82HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0N7DKH11e-98A0A0N7DKH1_9ROSI; Heat shock transcription factor C1
STRINGLus100236360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-82heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]