PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023656
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 579aa    MW: 62355.4 Da    PI: 7.2384
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023656genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.99.9e-14131170242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Lus10023656 131 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCGNCYNNVEN 170
                  89**************************.********9875 PP
2TCR50.93e-16215254140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Lus10023656 215 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 254
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-14130170IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.57131255IPR005172CRC domain
PfamPF036382.4E-10132167IPR005172CRC domain
SMARTSM011148.4E-20215256IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12218253IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGEGEGSEFP PNKAQQSESQ EVIPSSDFPA KKLARQLDFT QDSLTVPPLP DNPPAAASTA  60
PKLEVQSAVT QNQPHPIVDV PQPPIHQHPN QQQQQQQQQQ QGPPSLKPVK PESPKSRSRT  120
AAELKDGTPK KQKQCNCKHS RCLKLYCECF ASGTYCDGCN CGNCYNNVEN EAARREAIEA  180
TLERNPNAFR PKIASSPHAP RDNREENGDV LVLAKHNKGC HCKKSGCLKK YCECFQANIL  240
CSENCKCMDC KNFEGSEERQ ALFHSDHANN IAYIQQAANA AANAAITGAI GSSGFISPPV  300
SRKRKGSELF FGQTGRDPSH HRPTHIPHAN QNRDPSPSSN SVVRGCSTTT LTPSKFTYRS  360
LLADIIQPQD IKELCSVLVV LSGEAAKTLA EQRSEQEKQV ENQTEASIAS SSQERLETRK  420
ESDADKSVPG DFSNVNPSNK GGSGVSTSDD REEPSIVRPI SPGTLALMCD EQDTIFMEAG  480
LPNDLTGHGG ETKCSSLART EPADQKDMLS NGTTTSTRAV PVGIQPSVPF RNGASRNVIP  540
PTAKPLQMVS SAVAAPSNTV DFPKGPALSQ NMDGKPKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311222641132Protein lin-54 homolog
5fd3_B1e-311222641132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675305.10.0protein tesmin/TSO1-like CXC 5 isoform X3
SwissprotQ9SZD11e-167TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLB9RKN40.0B9RKN4_RICCO; Transcription factor, putative
STRINGLus100236560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-124Tesmin/TSO1-like CXC domain-containing protein