PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023669

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 377aa MW: 40530.2 Da PI: 6.9274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023669	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	234	272	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +Av YI+ Lq Lus10023669 234 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAVGYIRFLQ 272 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.566	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-10	232	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.76E-5	232	276	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-7	236	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNQGGHVLQQ NPNWWITSTM RPPLSSSSSS SSSSSSSSSS SLPFPSCHEH TNTTNEDHRL 60 PDSWRLLLGD EGKMSNFQEA SKRFDSFYQD HHQQLFNTSI NGCSSSLPDV KQESSGTATT 120 YVSSSYGHDH HQHATEEYNH QASANNNWPH HQFIANNNSS SPNSTSFMDF SAISSHHPPP 180 PPLLDPSSSE MNSSTGAAAA GGAAGGGGGG GGAPKKARVQ ASCSSSSQST IKVRKEKLGD 240 RITSLHQLVS PFGKTDTASV LLEAVGYIRF LQSQIEALSM PYLGSGSTNM RRPHHQHLRS 300 VPGERSCVFP EDPGQLLDDS CLKRKALSDQ QQEFDEAPKK DLRSRGLCLV PVSCTTQVGN 360 ENGADYWAPT LGGGFR*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNQGGHVLQQ NPNWWITSTM RPPLSSSSSS SSSSSSSSSS SLPFPSCHEH TNTTNEDHRL  60
PDSWRLLLGD EGKMSNFQEA SKRFDSFYQD HHQQLFNTSI NGCSSSLPDV KQESSGTATT  120
YVSSSYGHDH HQHATEEYNH QASANNNWPH HQFIANNNSS SPNSTSFMDF SAISSHHPPP  180
PPLLDPSSSE MNSSTGAAAA GGAAGGGGGG GGAPKKARVQ ASCSSSSQST IKVRKEKLGD  240
RITSLHQLVS PFGKTDTASV LLEAVGYIRF LQSQIEALSM PYLGSGSTNM RRPHHQHLRS  300
VPGERSCVFP EDPGQLLDDS CLKRKALSDQ QQEFDEAPKK DLRSRGLCLV PVSCTTQVGN  360
ENGADYWAPT LGGGFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023669

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019436625.1	1e-100	PREDICTED: transcription factor bHLH68-like
Refseq	XP_027341128.1	1e-100	transcription factor bHLH68-like isoform X1
Refseq	XP_027341129.1	1e-100	transcription factor bHLH68-like isoform X2
TrEMBL	A0A4P1RQ96	1e-98	A0A4P1RQ96_LUPAN; Uncharacterized protein
STRING	Lus10023669	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	9e-66	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10023669