PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023844
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 203aa    MW: 23307.6 Da    PI: 9.9849
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023844genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14897298
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  k+ +p   + +  l++p +f++++ ++   +  ++l+ ++g +W++ +   k ++++++ +GW +Fv++  +++g +++F+++g+  f  +v++f+
  Lus10023844  8 HKIILPRTLHDR-KLRIPDNFIKKFAND--LTPLVRLTVPDGHVWRIGI--VKADDKFWFHDGWHDFVESYSIRVGYMLIFRYEGNAIF--NVHIFN 97
                 555555555555.5***********655..4458***************..********************************998888..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-22399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22498IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-17597No hitNo description
PROSITE profilePS5086313.042699IPR003340B3 DNA binding domain
SMARTSM010191.9E-13799IPR003340B3 DNA binding domain
PfamPF023622.1E-111597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPARPYFHKI ILPRTLHDRK LRIPDNFIKK FANDLTPLVR LTVPDGHVWR IGIVKADDKF  60
WFHDGWHDFV ESYSIRVGYM LIFRYEGNAI FNVHIFNLSA SEINYQTNSL SGKRCLLFDE  120
LEDEDSAEYL QNTVPLYQVP FAMKGNNPQL NRASNPPNPA TQPAAVDVNR QFNAFDQRNA  180
SDAPVKVPKK RGRKKIKPDP GK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643265.11e-76B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A2C9U6M72e-72A0A2C9U6M7_MANES; Uncharacterized protein
STRINGLus100238441e-149(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-53B3 family protein