PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023866
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 442aa    MW: 49807.8 Da    PI: 4.4588
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023866genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.11.5e-29721792102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkgkk 91 
                   Fl+k++++++d+ l+ +isw  +g+sfvv+d+ ef++++Lp+ Fkh+nf+SFvRQLn+Y  +   + ++  k+       + + weF+++ F++g++
   Lus10023866  72 FLSKTFDLVDDQGLDPVISWGGRGESFVVWDPVEFSRTILPRNFKHNNFSSFVRQLNTYVGTFAGNGSSLLKAsvgfrkvDADKWEFANEGFRQGQR 168
                   9**********************************************************776666666554445666544499************** PP

                   XXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkks 102
                   +ll++i+r+k 
   Lus10023866 169 HLLRNIQRRKP 179
                   ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.76E-3068177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-4968177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3369177IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-2672177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-117295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-11110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-11123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MNPEDDNYSE SPDASSIPVC SVMEEMTIPA SPLMAFEDSS QAFEFKAEPL IPPVGIIPQP  60
LSILQETPVP PFLSKTFDLV DDQGLDPVIS WGGRGESFVV WDPVEFSRTI LPRNFKHNNF  120
SSFVRQLNTY VGTFAGNGSS LLKASVGFRK VDADKWEFAN EGFRQGQRHL LRNIQRRKPP  180
QMSTYVVESV DTEVERLRKE EGIMMQEVVQ LQRQQRGYVK HIETVNKRIQ DAEQRQKQML  240
SFLAKLFHNR AFLDRLKQSK EPRTTRKKFI RHNQPESSTQ PPDYALAGIV EEGLPFEMET  300
FVSDDLGLGQ EEEEPIIPPQ QIQGKATTLQ SEELYYKGKH VMGPQQQEFG PEYLVSFPED  360
AWSMGFDTRP VISCPGNELW DDMVRYDVPE FGGFAGGFSD IWDLGSSQGA GSSSVDKQLA  420
DESLLNEPPT DNISSLNNLD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-186917717120Heat shock factor protein 1
5hdg_A4e-18691777110Heat shock factor protein 1
5hdn_A4e-18691777110Heat shock factor protein 1
5hdn_B4e-18691777110Heat shock factor protein 1
5hdn_C4e-18691777110Heat shock factor protein 1
5hdn_D4e-18691777110Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619963.11e-121heat stress transcription factor A-3
TrEMBLB9SRG81e-116B9SRG8_RICCO; DNA binding protein, putative
STRINGLus100238660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-97heat shock transcription factor A3