PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023873
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 154aa    MW: 17185.7 Da    PI: 10.9972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-181161155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Lus10023873 11 PSYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 61
                 57*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-111161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-301271IPR001471AP2/ERF domain
PROSITE profilePS5103223.0111269IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-201270IPR016177DNA-binding domain
SMARTSM003801.9E-351275IPR001471AP2/ERF domain
PRINTSPR003672.8E-81324IPR001471AP2/ERF domain
CDDcd000186.07E-291471No hitNo description
PRINTSPR003672.8E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MQPSQQQQQY PSYRGVRRRS SGKWVSEIRE PKKPNRIWLG TFPTPEMAAV AYDVAALALK  60
GRDAEVNFPN SSASLPVPAS TSPRDIQAAA ASSAARHRPP RRRLGGNDFA ETHXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXPMDVPL TYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-149701173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021644862.12e-46ethylene-responsive transcription factor ERF024
TrEMBLA0A2C9VCX72e-44A0A2C9VCX7_MANES; Uncharacterized protein
TrEMBLB9SRH62e-44B9SRH6_RICCO; Dehydration-responsive element-binding protein 1B, putative
STRINGLus100238731e-78(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-24ERF family protein