PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023912
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 262aa    MW: 28371.1 Da    PI: 7.9063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023912genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05185207123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg+ Fs+   L  H+r+H
  Lus10023912 185 HECSICGTGFSSGQALGGHMRRH 207
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-9112137IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-9112135No hitNo description
SMARTSM003550.31113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-9180207No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4183207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-11184208IPR007087Zinc finger, C2H2
SMARTSM003550.021185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVMDQSMVVD GLTLDVGCCS VKGKRTKRQR PLSPLPFPGG DIVTNNQSSA AESSCTVEEE  60
DMANCLILLA QGGRQQLLRQ EEEPRKLSIA SDSKQVAAEE GAVTVAERGV FVYQCKTCER  120
CFSSFQALGG HRASHKKPRT TDQADVDRKL SSGDRKLKEE INRGEELSLS LRIVTPAAVK  180
PNKVHECSIC GTGFSSGQAL GGHMRRHRTV VPATSTSAAV VVRSGLEWDL NLPAPEEGRE  240
SNKFRFAFSS SSAFPLVDCH Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428462.23e-56zinc finger protein ZAT5
RefseqXP_006493540.13e-56zinc finger protein ZAT5-like
TrEMBLA0A2H5QKA61e-54A0A2H5QKA6_CITUN; Uncharacterized protein
TrEMBLV4SM301e-54V4SM30_9ROSI; Uncharacterized protein
STRINGLus100239120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-36C2H2 family protein