PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024031
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25837.1 Da    PI: 6.6874
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1964116456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Lus10024031  64 KRKLTDEQVTSLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 116
                  5689************************************************9 PP
2HD-ZIP_I/II119.81.5e-3863154293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkr+l++eqv++LE +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+++d ++ +++rLe+ev +L+e+l+e
  Lus10024031  63 KKRKLTDEQVTSLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKTKKLEEEYSKLKSSHDLITLHKCRLESEVLQLKEQLTE 154
                  9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.5258118IPR001356Homeobox domain
SMARTSM003893.9E-1761122IPR001356Homeobox domain
SuperFamilySSF466893.18E-1762119IPR009057Homeodomain-like
CDDcd000861.27E-1563119No hitNo description
PfamPF000465.9E-1764116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-2065125IPR009057Homeodomain-like
PRINTSPR000311.0E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000311.0E-598114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDDLSCNILI YPAAVYDPQP LLLPHPHQGY LSTGGEEPNQ KAAGRRRRRK KKEQSGGEGS  60
MLKKRKLTDE QVTSLELNFG NEHKLESERK DRLAAELGLD PRQVAVWFQN RRARWKTKKL  120
EEEYSKLKSS HDLITLHKCR LESEVLQLKE QLTEAEKEIQ RLSMITERSA DVASSNSPSS  180
SLTTMDPQQQ FFGGGGGFGG VEDQYQDVLY SMPESAYVVN GMEWVYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551RRRRKKK
24552RRRRKKKE
34752RRKKKE
44965KKKEQSGGEGSMLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024031
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437310.12e-62PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232082e-59ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2TIR81e-59A0A0D2TIR8_GOSRA; Uncharacterized protein
STRINGLus100240311e-169(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-45homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]