PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024071
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 133aa    MW: 14434.3 Da    PI: 9.1125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024071genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-0537681854
                 HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +++  L++l+ +      +K + a++L++A++YI+ L
  Lus10024071 37 DRIVGLQQLVSPY-----GKTDTASVLQEAIDYISFL 68
                 5666677777776.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6741968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-103480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-83575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-53773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MMLKSKRPSS TSSFQNTKRM KPDDHHPNSR KDKQLGDRIV GLQQLVSPYG KTDTASVLQE  60
AIDYISFLHQ QLKVLSSPYL LSSSSATINH DWIENSAGAL RSRGLCLVPL DATAVIDHGA  120
NGADLWAPTT ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309594.14e-37PREDICTED: transcription factor bHLH113
SwissprotQ7XJU14e-33BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A078JM075e-35A0A078JM07_BRANA; BnaAnng25330D protein
TrEMBLA0A0D3DJ231e-34A0A0D3DJ23_BRAOL; Uncharacterized protein
STRINGLus100240712e-93(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-30bHLH family protein