PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024140
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 333aa    MW: 36885.5 Da    PI: 8.4575
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024140genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.3e-104586445
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Lus10024140 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86
                 5888*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-842105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154488IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-74689No hitNo description
PfamPF001705.7E-74686IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-74791No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141442.1E-33128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADTSPRTDS GDADSDEQSP GFDRGLSGVV AASESSDRSK DKMDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQAHSMGGNG AMAFDVEYAR  120
WLEEQNKQIN ELRAAVNSHA GDTELRIIID GIMAHYDEIF RLKSNAAKAD VFHLLSGMWK  180
TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQLVGLTNL QQSSQQAEDA LSQGMEALQQ  240
SLAETLSSGT QPGSSGTSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL  300
TTRQSARALL AIHDYLSRLR ALSSLWLARP RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649403.10.0transcription factor TGA6-like, partial
RefseqXP_021649414.10.0transcription factor TGA6-like
RefseqXP_021649415.10.0transcription factor TGA6-like
RefseqXP_021649416.10.0transcription factor TGA6-like
RefseqXP_027354195.10.0transcription factor TGA2.2-like isoform X2
RefseqXP_027354196.10.0transcription factor TGA2.2-like isoform X2
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLB9RG750.0B9RG75_RICCO; Transcription factor HBP-1b(C1), putative
STRINGLus100241400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-171TGACG motif-binding factor 6