PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10024183

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 226aa MW: 24261.5 Da PI: 8.9743

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10024183	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+++l++el+ ++ Lus10024183 22 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQQQIQSLQSELNGVR 119 7*********************************************************************************************9988 PP DUF260 99 ee 100 +e Lus10024183 120 SE 121 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.794	21	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-41	22	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGMRSIVMNM ISPPGVLNTV TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA 60 SNVSKMLLEV PESQRADAAN SLVYEANLRL RDPVYGCMGA ISALQQQIQS LQSELNGVRS 120 EILKYKYREA TTSLLSSAAH ASLISSGVVS VIAPTTPVVV GPNQHRHHQP QPPRTPTPAP 180 PPPQPSIVIS SSSSSTNASN NNNNTNNLYS SITASDRHSG VPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-44	22	129	11	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-44	22	129	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10024183

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY795561	2e-68	AY795561.1 Triticum aestivum LOB1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091188.1	2e-83	LOB domain-containing protein 15
Refseq	XP_021602074.1	4e-83	LOB domain-containing protein 13-like isoform X1
Swissprot	Q9AT61	5e-75	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A067JNV9	5e-82	A0A067JNV9_JATCU; Uncharacterized protein
TrEMBL	A0A199UCG4	8e-82	A0A199UCG4_MANES; Uncharacterized protein
STRING	Lus10024183	1e-164	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-67	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Lus10024183

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]