PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024200
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 520aa    MW: 58683.9 Da    PI: 5.2424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024200genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-12468517147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + rW++eE++ l ++v  +G+g+Wk I +       gR+  ++k++w++ 
      Lus10024200 468 KRRWSAEEEDALREGVYAFGKGNWKDILNSRRdifAGRSSVDLKDKWRNM 517
                      579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-14462518IPR009057Homeodomain-like
PROSITE profilePS5129417.385463519IPR017930Myb domain
SuperFamilySSF466892.02E-15464518IPR009057Homeodomain-like
SMARTSM007171.8E-5467519IPR001005SANT/Myb domain
PfamPF002491.6E-9468517IPR001005SANT/Myb domain
CDDcd116608.18E-17469518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSAACQPDKD ISRWIAEFLI RQPIPGFLVE SVISSLDALV IDSDWRIKKK RTLNLIQQEI  60
SRKGSLSEKM LELLETVEKF DRENGIAITE TMKAAYAALA LECTLEVFSF EVLERIWRGR  120
VQNLEKLQES ELVTDELRKC WDDVEAAVWD LDLRYRLLES TKRKDALRLV EAYLEEAMMG  180
NDDEPSFLEL AARREKELEE NAKYRHDENE KDADIRQDLG AEGGMKNGLE QVPDDDRQPV  240
SVSSPAAETK KGYRRVKCIP SRKHPTRKGR STGNIPSSKY DTLSTPEVKL VKDALQSSSI  300
ELQAVVKDPL PDALYRSEPV IAGPRQNICN KEALVEDHNG KNLDASDPSV DAIMSELNSE  360
GLNPDVHVEQ SNGIDEDGST PSNTLDPGRM RTDERNKAIC SSERLRVSKP SLMARNITAS  420
AHEWDDSLGS SSEGTSNGTR RNKIKRPKIE LPPSTKDDST HNSPRRKKRR WSAEEEDALR  480
EGVYAFGKGN WKDILNSRRD IFAGRSSVDL KDKWRNMMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100242000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-12MYB_related family protein