PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024298
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 260aa    MW: 27762.4 Da    PI: 6.5929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a++aa++kl+g
  Lus10024298 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDAAARKLYG 89
                 69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.43E-203998No hitNo description
Gene3DG3DSA:3.30.730.103.0E-304098IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-214098IPR016177DNA-binding domain
PfamPF008472.4E-134089IPR001471AP2/ERF domain
SMARTSM003806.9E-3540103IPR001471AP2/ERF domain
PROSITE profilePS5103222.3924097IPR001471AP2/ERF domain
PRINTSPR003671.7E-94152IPR001471AP2/ERF domain
PRINTSPR003671.7E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPNATSSSTS DHCPKPRASS GSSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHDAALAY DAAARKLYGP DAKLNLPHFH NSPNNTNHNN IVPHVDVHVP  120
LSLISSGGPT LSPSFTSSSS SNNGPTFTSN NADVGYRGFD LPLHGGDGGQ WVDHYSSSDW  180
KNTDSSAAAA AADASCNYNY KVGGNEVWSN LNANLPLMDD SIWVEAAMSL DYFQVAAMQD  240
SNGWDTAALP PSNTTPWCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100242980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-39ERF family protein