PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024363
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 189aa    MW: 20782.1 Da    PI: 6.8787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024363genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000334870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ Fs+   L  H+  H
  Lus10024363 48 YTCAFCKRGFSNAQALGGHMTIH 70
                 9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-74474No hitNo description
Gene3DG3DSA:3.30.160.601.4E-54474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0744875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSPGGSFFLI MNLGRGQYNS DQKPDTQIVW RQQHQLENDG DQVREKSYTC AFCKRGFSNA  60
QALGGHMTIH RKDRAKLKEA ADHHYHFQTL LSLDISNNNN SSSTSSSSSP PPPPPRSKIV  120
SDNDDDQPRM QVLDPLFVDI DHEGSGEVQL DLELRLGPEP PPPKVQPAAP CKTSSPSSPS  180
GATTRRFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9IFX24e-21B9IFX2_POPTR; Uncharacterized protein
STRINGLus100243631e-138(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-15C2H2 family protein