PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024428
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 191aa    MW: 20107.2 Da    PI: 10.3245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164971123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ Fs+   L  H  +H
  Lus10024428 49 FECKTCSRKFSSFQALGGHRASH 71
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-114873IPR007087Zinc finger, C2H2
SuperFamilySSF576673.15E-948122No hitNo description
SMARTSM003550.44971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6164976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139127.7E-10100124IPR007087Zinc finger, C2H2
SMARTSM003550.3100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAMKRSRADG SEFESLDLAK CLIYLSHGFN AAANSKPRQG GDSAAADVFE CKTCSRKFSS  60
FQALGGHRAS HKRPKTSLGS DKLGHDDGKL LGLMTKPKMH ECTICGVEFA LGQALGGHMR  120
RHRAASMATA TPTLAAAGRG PVAAAVGGSK VPVLMRTSSS KRVFGLDLNL TPLENDLEYL  180
FGKMAPKVSV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533000.16e-72zinc finger protein ZAT11
TrEMBLB9T4311e-70B9T431_RICCO; Zinc finger protein, putative
STRINGLus100244281e-137(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-46C2H2 family protein