PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024491
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 225aa    MW: 25358.1 Da    PI: 5.1733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024491genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.7e-154596156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 + ++GVr ++  ++Wv+e+r p+    + +r++lg++ t+e+Aa+a++ a ++++ge
  Lus10024491 45 PVFRGVRSRS-GNKWVCELRLPK----KeTRVWLGTYPTPEMAARAHDVASLAFRGE 96
                 579***9776.9*********84....35**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-104596IPR001471AP2/ERF domain
PROSITE profilePS5103220.3146103IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1746105IPR016177DNA-binding domain
SMARTSM003801.7E-2146109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-2646105IPR001471AP2/ERF domain
PRINTSPR003675.9E-74758IPR001471AP2/ERF domain
CDDcd000185.46E-2447105No hitNo description
PRINTSPR003675.9E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEMMYSSGQH YSESSSSSSS SITQLASEVP KRKTGRKVLK ETRHPVFRGV RSRSGNKWVC  60
ELRLPKKETR VWLGTYPTPE MAARAHDVAS LAFRGESGCL NFADSAWRLP VPASLDPKDV  120
RKAAAQAAEM FRPQSCFPVA AAAEEEEEER NYSCFSTSSY SNNNNYYVDE EEVLEMPRLL  180
SEMAEGLLLS PPWTYGLETG HNQWGHFVET TDDDADHYNW SLWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087007.19e-73dehydration-responsive element-binding protein 1A
TrEMBLA0A067JZT22e-71A0A067JZT2_JATCU; Uncharacterized protein
STRINGLus100244911e-167(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-53C-repeat/DRE binding factor 2