PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024508
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 409aa    MW: 44336.5 Da    PI: 5.0231
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024508genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.2e-36921832102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
   Lus10024508  92 FLTKTYQLVDDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKSLLRDIQ 179
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10024508 180 RRKI 183
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5888181IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.45E-3589181IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-3889181IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-2092115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3292181IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-20130142IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340131155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-20143155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGEGFFLTKD NKKISQHRDH TPSSLCFVDL RIYTCQCRRR QLNLAAKPSP SPSLLGVPAS  60
ASAAGSAGGR GGGCGGGTGG TADSQRALPT PFLTKTYQLV DDPAVDDLIS WNDDGSTFIV  120
WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFRRG EKSLLRDIQR  180
RKISVATAVP AGNPSVAAIA TGLTISPANS GEEQVISSTS SPAANAILRT TSCTTTTELL  240
EENESLRKEN SQLCHELTQL RGLCNNIMLL MNNYSSGQVN GSISNNSPIL SEGKPLDFMP  300
STKVGGGTSE TIVGNDSRVT LAAADPISPR LFGVSIGVKR VRIDEEEEEE EVEEEELGEA  360
EEEKTKDRVW GLQETAGESE VKLKPLDRNN KGCTASNDQE TAWLELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-289218620125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024508
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029218.11e-132PREDICTED: heat stress transcription factor B-2b
RefseqXP_011029219.11e-132PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-101HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A067JRM81e-128A0A067JRM8_JATCU; Uncharacterized protein
STRINGLus100245080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]