PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10024603

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 248aa MW: 27883.6 Da PI: 7.406

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10024603	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	207.1	6.3e-64	28	209	7	170
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...............lleelkveeenlksnveke 89 eq+Cyv+Cn C+t+lavsvPs+s fk+vtvrCGhCt+ll vn++ + l ++ ++ ++ +++ ++ + ++ Lus10024603 28 EEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNFLPTSPTPMNPPFQLFspttttqldefssnpNANTPSPPPSQSLLMFNNQ 125 69****************************************998866665555443332222223332222222212222222222211111222 PP YABBY 90 esastsvssekl.............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++++ e+pr+p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Lus10024603 126 -----------IndfefqsaarfapDHHQHLELPRPPLfVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIQFGL 209 ...........1333444444456577788899998879****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-65	27	209	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-9	150	203	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.4E-6	157	203	IPR009071	High mobility group box domain
CDD	cd01390	4.07E-6	163	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSMSSMTLSL DHHYQQQQQQ QLPPSPPEEQ LCYVHCNICD TVLAVSVPSS SWFKTVTVRC 60 GHCTHLLPVN MMRPNFLPTS PTPMNPPFQL FSPTTTTQLD EFSSNPNANT PSPPPSQSLL 120 MFNNQINDFE FQSAARFAPD HHQHLELPRP PLFVNRPPEK RQRVPSAYNR FIKEEIQRIK 180 AENPDISHRE AFSAAAKNWA HFPHIQFGLM PDQPLKKKAN TLLHHPPQEA EGGFFSSANV 240 GVAAAPY*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10024603

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021666324.1	2e-78	protein YABBY 4-like
Swissprot	Q01JG2	2e-59	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-59	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A061G3I5	1e-75	A0A061G3I5_THECC; Plant-specific transcription factor YABBY family protein
STRING	Lus10024603	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-58	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10024603

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]