PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024754
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 592aa    MW: 64812.1 Da    PI: 6.5121
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024754genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22114213298
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   kvlt sd+++ g +++p+ +a+++         ++ +  tl++ d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+v+F+  ++ ++e+
  Lus10024754 114 AKVLTASDANNGGGFSVPRFCADSIfpplnyeADPPVQ--TLSVSDVHGIRWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVLFM--KNCRGEM 207
                  699*******************999****995444444..9************************************************..779999* PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +++v+r
  Lus10024754 208 FIGVRR 213
                  ****98 PP
2Auxin_resp76.85.6e-26263346283
   Auxin_resp   2 ahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   ++a+++ +FevvY+Pr+ s s+Fvv+++ ve+al++ +s G+R+kma+e+ed s+ ++ +Gtv++ +      W++S+Wr+L+
  Lus10024754 263 TERAAQGLPFEVVYYPRSwSFSDFVVNADVVEAALSMFWSSGTRVKMAVESEDLSRATWfQGTVASATVPGCGPWQGSPWRMLQ 346
                  578999***********7477************************************************999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-30105231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-31112219IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-14113215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984113215IPR003340B3 DNA binding domain
PfamPF023622.5E-20114213IPR003340B3 DNA binding domain
CDDcd100171.69E-17115213No hitNo description
PfamPF065075.0E-23263346IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVDRRIWQSC AGSSIHIPTL NSRVYYFPQG HLEQSSSSTL PFLSSLVLSR PMILCRLSSI  60
QFLADPVTDE VYVKLFLHPL DPSSLNAAAL PLLEPSPTAA SAAAANNDGI MAYAKVLTAS  120
DANNGGGFSV PRFCADSIFP PLNYEADPPV QTLSVSDVHG IRWDFRHIYR GTPRRHLLTT  180
GWSKFVNSKK LIAGDSVLFM KNCRGEMFIG VRRVARSNNA ANFARWRDDF GTGGDGKVKL  240
KEDGCSRTSA KGMLSPETVA DVTERAAQGL PFEVVYYPRS WSFSDFVVNA DVVEAALSMF  300
WSSGTRVKMA VESEDLSRAT WFQGTVASAT VPGCGPWQGS PWRMLQIKWD EPEVLQSAQR  360
ISPWRVEFVS TNSSLGTGIP PAKKLRYPDK SEFLIDGERD IRFPLSGLAN STMAQMNQPL  420
LSYNNFPAGM QGARHYSFPT FELSNSVGDN VLQIGADTCV TNIMVPKRSS VSTELNIGSS  480
QSENLSPDSQ SSVQSFSTEL VGNQGCTSRN WGTSSFQLFG KMIHMNQPVE RGSSDVVSCL  540
EDENAKKCKD NQGVNQLLDL SLTSSYSELL NKIDVQCQRS GGLEAYEQSI V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-67437321359Auxin response factor 1
4ldw_A6e-67437321359Auxin response factor 1
4ldw_B6e-67437321359Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078139.10.0auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGLus100247540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-165auxin response factor 17