PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024823
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 292aa    MW: 33270.2 Da    PI: 6.1421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024823genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.26.9e-26958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng +KK +ELSvLCd++va+i+fs++g+l  +s
  Lus10024823  9 KRIENTTNRQVTFSKRRNGFIKKVYELSVLCDVDVALIMFSPSGRLSFFS 58
                 79********************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.763161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.33E-36271No hitNo description
PRINTSPR004048.0E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRVKVQMKR IENTTNRQVT FSKRRNGFIK KVYELSVLCD VDVALIMFSP SGRLSFFSAG  60
NQSIEEILSR YVHLPEHERG RSGGFPNTSE CEFQEFEQGM RRLRTQMEDA HKQLRILEGN  120
VTHITTLYEA EYQEQILQDA LKRILIRKQS LEQKLVSSDA DNLMITQQAP SPSFVMDWIP  180
SPQLQSLNFL EDSSTLRDHT VLDAADQHQV MSPPLCLEHQ NNNGGDPHAH HWGHFDNSLV  240
LSNHNHQYSE GLSFVATDEM PRHNGTSWEE LLLNNNIDNL GFPRTNAPSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-17182180Myocyte-specific enhancer factor 2B
1tqe_Q7e-17182180Myocyte-specific enhancer factor 2B
1tqe_R7e-17182180Myocyte-specific enhancer factor 2B
1tqe_S7e-17182180Myocyte-specific enhancer factor 2B
6c9l_A7e-17182180Myocyte-specific enhancer factor 2B
6c9l_B7e-17182180Myocyte-specific enhancer factor 2B
6c9l_C7e-17182180Myocyte-specific enhancer factor 2B
6c9l_D7e-17182180Myocyte-specific enhancer factor 2B
6c9l_E7e-17182180Myocyte-specific enhancer factor 2B
6c9l_F7e-17182180Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024823
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678745.11e-74agamous-like MADS-box protein AGL104
TrEMBLA0A2C9U0P67e-72A0A2C9U0P6_MANES; Uncharacterized protein
STRINGLus100248230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-41AGAMOUS-like 104