PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024850
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 291aa    MW: 31204.5 Da    PI: 6.1699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024850genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10140184554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR++i +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10024850 140 HSIAERLRREKIAERIRALQELVPSvN------KTDRATMLDEIVDYVKFL 184
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-11133189No hitNo description
SuperFamilySSF474592.09E-15133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.228135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGNPPDTPA DDFLHEILRL HSFASADDAL AVASEAQAPM FLQLSSGDAS SAGMTGDTPG  60
FHGFPLGLGL DQGKGGFLKP DDASGSGKRF REDFVFDGRV PGVQNVFHGQ PMPTSVPAAP  120
HAPTMRPRVR ARRGQATDPH SIAERLRREK IAERIRALQE LVPSVNKTDR ATMLDEIVDY  180
VKFLRLQVKV LSMSRLGGAG AVVPLVTEIP LSSVEDESGR SQPAWEKWTS DGTERQVAKL  240
MEENVGAAMQ LLQSKALCIM PISLASAIYH TQPPLLDPQA VVKPESNPPS *
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092123.11e-149transcription factor UNE12
RefseqXP_012092124.11e-149transcription factor UNE12
SwissprotO227681e-118UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067JPB11e-148A0A067JPB1_JATCU; Uncharacterized protein
STRINGLus100248500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-114bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]