PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024875
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 162aa    MW: 18186.2 Da    PI: 6.5797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024875genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-052244123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C k Fs+   L  H+++H
  Lus10024875 22 YVCNFCRKDFSSAQALGGHMNVH 44
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-61948No hitNo description
Gene3DG3DSA:3.30.160.603.3E-42244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.992249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEKTCRTRTK PRDPHPHHRS WYVCNFCRKD FSSAQALGGH MNVHRLDRAR LLLLPPSSSS  60
SSSSSPSHLS PPSDPLHGST DDDDDYDDKE QYHRHPTNLQ LTTFFPTHRE SVLLMASHKL  120
KDEEDQQEEQ AVRLDLGMEA AAAAPKPALD LELRLGCFTS V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024875
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100248751e-115(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-11zinc-finger protein 10