PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024907
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 165aa    MW: 18735.6 Da    PI: 10.0458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.5e-1671302128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlskk 96 
                  p+G+rF+P+ e+++ eyL +kv+g++l+   vi + d+y   e w+     +++ +e+yf +k  kk+++ gkr  r + ++g+W++  +d++v+s +
  Lus10024907   7 PVGYRFRPSCEQVI-EYLLNKVKGNTLPS--VIFDRDLYGEdEVWKSL-FSETNASELYFCTKLLKKKKKdGKRVVRkVGTNGTWRSN-RDEQVFS-Q 98 
                  89************.9**********988..89999999872455532.344566799998887665554399999956669***976.6789999.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  g ++g k+ + + +++++       vm+eyrl
  Lus10024907  99 GVHIGSKRCFSYQEKEKSAVGGLGFVMDEYRL 130
                  99***********9999998999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-173151IPR003441NAC domain
PROSITE profilePS5100520.5336151IPR003441NAC domain
PfamPF023653.4E-127130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRIPGAPVGY RFRPSCEQVI EYLLNKVKGN TLPSVIFDRD LYGEDEVWKS LFSETNASEL  60
YFCTKLLKKK KKDGKRVVRK VGTNGTWRSN RDEQVFSQGV HIGSKRCFSY QEKEKSAVGG  120
LGFVMDEYRL DGVLGGHPEA SEVVICCVRK KLDKKMGKSN RYRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024907
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100249071e-118(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-06NAC-domain protein 101