PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025232

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 108aa MW: 12062.6 Da PI: 8.7413

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025232	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.2e-07	69	107	1	39
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgL 39 r+k++++t++q++ L + F++++++ e++ +LA+k+gL Lus10025232 69 RCKKRRLTASQVQFLDRSFKNENKLGPERKIQLANKIGL 107 678889******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.34E-6	55	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-7	60	107	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-4	69	107	IPR001356	Homeobox domain
CDD	cd00086	3.58E-4	71	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MASENSSALA AASTTSLTGS HPFPPLSTVK FQTAARQMVE YENDRNFFNP MVKEELYCDE 60 DFENGSSPRC KKRRLTASQV QFLDRSFKNE NKLGPERKIQ LANKIGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025232

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10025232	1e-74	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-11	homeobox 1

Link Out ? help Back to Top
Phytozome	Lus10025232