PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025388

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 259aa MW: 28899 Da PI: 9.0776

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025388	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49	1.1e-15	161	252	5	96
-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ps+ ++ + l lp +f+ e+ ++k s ++ l+ + g++W+vk+++ +k+ +++ +k W F+++ngLk D++ F++ ++ +++e+++ v Lus10025388 161 VQPSYFTAGsKSLFLPSSFFLENFKDK--SGDIFLRVLGGNTWKVKYSVYGKKAAVFTAKTWGAFARDNGLKLDDVCAFEVPKKcETKEPTLNV 252 4444444434779********8775..558***********99999999***********************87777777776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.318	1	51	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-6	9	48	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.1E-6	9	49	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.1E-20	149	256	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.9E-18	150	255	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.03E-15	155	238	No hit	No description
SMART	SM01019	1.4E-11	157	258	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.632	158	258	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-12	160	251	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MPSESGDKGG KMWFDEGWRE FAAFYSIAPD HLLAFQYHGH GNFHVFIFTE IVYRTQLPEP 60 DVHVKLECGA DSYGEIFPSP KTRDKRPLES LPPPPSKLRR TTLNSDRRLG EYLGHEGLNH 120 DLGGASWKRK LITFAGGETT SCLARATAAF KSENPFIMKV VQPSYFTAGS KSLFLPSSFF 180 LENFKDKSGD IFLRVLGGNT WKVKYSVYGK KAAVFTAKTW GAFARDNGLK LDDVCAFEVP 240 KKCETKEPTL NVVIFHAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025388

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10025388	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10025388