PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025471
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 158aa    MW: 17491.1 Da    PI: 7.3825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025471genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144466123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  Lus10025471 44 FSCNYCERKFYSSQALGGHQNAH 66
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-64271No hitNo description
PROSITE profilePS5015711.1574471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDHDDECHYN QVNLNLILEP SSSSSTTSSP RGGPAAVDHL PRVFSCNYCE RKFYSSQALG  60
GHQNAHKLER TLAKKSRDIL GGSLSRRVNG GGGWSHRMHD SSSSSGHGGI RVGVKPERRG  120
QYRNEYGDVA EDRGSWYVES DHHVQEEFSH LDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474223.13e-28PREDICTED: zinc finger protein 2
RefseqXP_012474225.13e-28PREDICTED: zinc finger protein 2
TrEMBLA0A0D2MW776e-27A0A0D2MW77_GOSRA; Uncharacterized protein
STRINGLus100254711e-112(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-24zinc finger protein 2