PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025518
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 362aa    MW: 38763.5 Da    PI: 7.2356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025518genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10295340655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Lus10025518 295 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 340
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.795289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-13292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-11293344No hitNo description
Gene3DG3DSA:4.10.280.105.5E-13294352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-8295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-12295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MYPPPPPPPA STSSSSSPQK PALQSSSGLA RYCSAPGSFL TRAVDSVIGS VDDRHFSSAV  60
DRYFSSGGES DFSSSQLTSE STCRLNSSSS AAAQEGGDQL KRSGELNAIA RGAAAAATST  120
SSGFLLRQKS SPAGFLTNLV SESGFTITRG NSGNGGYPAQ GLKSQLSFTG QESLSHISEG  180
SESDVVEADQ NGRHNNNNSS GYHHHPPSGF VMDTWDNSNN SNSITFSSSG GQSNNKRYRN  240
MDGEFYTSYN GLETQFSMPQ TTLEMAAVDK MLQIPEDSVP CKVRAKRGCA THPRSIAERE  300
RRTRISGRLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ NELEKLHQDM DNCTCGCRPS  360
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527387.11e-120transcription factor bHLH128
SwissprotQ8H1023e-76BH128_ARATH; Transcription factor bHLH128
TrEMBLB9SN181e-118B9SN18_RICCO; DNA binding protein, putative
STRINGLus100255180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]