PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025534
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 250aa    MW: 27549.3 Da    PI: 4.9442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025534genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1517110197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k+   s  l ++ l +p kf++e+g++  +    tle +sg +Wev l  +k +++   +  +GW++F+k   L+ g f++F + gr++f   v +
  Lus10025534  17 FIKIIFESTILDKK-LKIPSKFISEFGQQLVGCAAATLEAPSGDKWEVGL--EKDRQGfvWFCNDGWERFAKFYTLEHGHFLLFGYRGRTDF--SVVI 109
                  66777777777776.***********88888999****************..888888556788***********************99999..7776 PP

                  E CS
           B3  97 f 97 
                  +
  Lus10025534 110 C 110
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1413111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-1216111No hitNo description
PROSITE profilePS5086310.64416113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1516110IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-1217111IPR003340B3 DNA binding domain
SMARTSM010196.1E-817113IPR003340B3 DNA binding domain
CDDcd100171.44E-6179242No hitNo description
Gene3DG3DSA:2.40.330.107.6E-4186242IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAASSSQARR GEEVIRFIKI IFESTILDKK LKIPSKFISE FGQQLVGCAA ATLEAPSGDK  60
WEVGLEKDRQ GFVWFCNDGW ERFAKFYTLE HGHFLLFGYR GRTDFSVVIC DIYAAEIPYP  120
TLSFPARVEI EHEEEDSLPI SLESLSVDAA AANEKAKSPM VDDSAGSYDA SEDPSGSELS  180
SFKIRIPPSY LNARQRVEVK LMVGNKVWPV RAGLGRGISV KLASGCIGFA KENSLEVEDV  240
CVRADRNIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100255340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-20B3 family protein