PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025582

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 169aa MW: 18401.3 Da PI: 9.7873

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025582	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	60	104	3	44
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l d+ +++ ++ + ++Ia+ ++ +t ++ +r Lus10025582 60 DWTPEEQSILEDGLAKYASEsnigRYSKIAKQLP-DKTVRDVALRC 104 7*********************************.99999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.09E-7	53	111	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-5	57	110	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-6	59	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-7	60	117	IPR009057	Homeodomain-like
CDD	cd00167	7.36E-8	61	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MANPSGKQLQ NRNQDAPASN NNNNNDSSSS LNGNNPANGY LESSNPTVAA LKHNPGISND 60 WTPEEQSILE DGLAKYASES NIGRYSKIAK QLPDKTVRDV ALRCRWMSKK ESSKKRKEEN 120 VRRGKDKKEK LTDVSTKPSS TVVRSNAPAY ANTVAPIDYD DGISFKGC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	128	RRGKDKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025582

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532722.1	4e-58	uncharacterized protein LOC105628422 isoform X2
Refseq	XP_021661238.1	1e-57	uncharacterized protein LOC110650539
TrEMBL	A0A067LI47	1e-55	A0A067LI47_JATCU; Uncharacterized protein
STRING	Lus10025582	1e-120	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3657	2	2

Link Out ? help Back to Top
Phytozome	Lus10025582