PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025789

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 347aa MW: 38530.6 Da PI: 6.7916

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025789	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	7e-09	84	108	2	26
XXXCHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKka 26 +++k++rr+++NReAAr+sR+RKk Lus10025789 84 SSDKVQRRLAQNREAARKSRLRKKG 108 589********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.7E-7	80	107	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-29	147	222	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNSSSTHFVT SGGMDMYDHV QQLSMWGETF RSNGSPNALT SILIPNAAQS LIITADMKLD 60 NQSEDTSNGT PGPLYKYDQE VTKSSDKVQR RLAQNREAAR KSRLRKKGSY ACSGIEGNRV 120 GSNGAINSGI ATFEMEYGHW IEEQQKHVCE LRAALSSEIG DGDIRILVEA SLNHYYELFR 180 MKGAAAKADV LYVMSGLWKS PAERFFLWIG GFRPSELIKV LRPQIEPLAE PQLQNICNLG 240 QLCQQAEDAL SQGMERLQQT LAQSVADGQL GEASYSPQID TAMEKLDSLI RFVRQADHLR 300 KLALVQVSQI LTPRQAARGL LALGEYFDRL KSLSRVWETN SPREQA*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNSSSTHFVT SGGMDMYDHV QQLSMWGETF RSNGSPNALT SILIPNAAQS LIITADMKLD  60
NQSEDTSNGT PGPLYKYDQE VTKSSDKVQR RLAQNREAAR KSRLRKKGSY ACSGIEGNRV  120
GSNGAINSGI ATFEMEYGHW IEEQQKHVCE LRAALSSEIG DGDIRILVEA SLNHYYELFR  180
MKGAAAKADV LYVMSGLWKS PAERFFLWIG GFRPSELIKV LRPQIEPLAE PQLQNICNLG  240
QLCQQAEDAL SQGMERLQQT LAQSVADGQL GEASYSPQID TAMEKLDSLI RFVRQADHLR  300
KLALVQVSQI LTPRQAARGL LALGEYFDRL KSLSRVWETN SPREQA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075186.1	1e-170	transcription factor TGA1
Refseq	XP_020535956.1	1e-170	transcription factor TGA1
Refseq	XP_020535957.1	1e-170	transcription factor TGA1
Swissprot	Q39237	1e-139	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A067KGJ6	1e-162	A0A067KGJ6_JATCU; Uncharacterized protein
STRING	Lus10025789	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-141	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10025789

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]