PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025834
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 225aa    MW: 24352 Da    PI: 4.2767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025834genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-154998255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr ++ +g++v+eIr p++   + r++lg+f tae+Aa+a++ a ++++g
  Lus10025834 49 IFRGVRKRS-WGKFVSEIRQPRK---KSRIWLGTFPTAEMAARAHDVASLSIKG 98
                 59****888.**********843...6*******************99888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-3048108No hitNo description
PfamPF008471.6E-104897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2949107IPR001471AP2/ERF domain
SMARTSM003809.2E-3349112IPR001471AP2/ERF domain
PROSITE profilePS5103222.10249106IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1949107IPR016177DNA-binding domain
PRINTSPR003677.6E-105061IPR001471AP2/ERF domain
PRINTSPR003677.6E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPEKYTTSTT TTTTTTSPSS SSSSSSGDNR KRPRNDGDDA AQQQNVQPIF RGVRKRSWGK  60
FVSEIRQPRK KSRIWLGTFP TAEMAARAHD VASLSIKGDS AILNFPHLAA FLPRPASLSP  120
PDIQEAAAKA AAMVDLDSNS SSAALIAEEE EEELGEIVEL PNIEGSLFFE PEFGVNELVE  180
FESSAECQQQ LGWVYYCYPP PPAGLDLDTT VISGELDGPL LWAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19501071573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470173.12e-53PREDICTED: ethylene-responsive transcription factor TINY
RefseqXP_016741318.12e-53PREDICTED: dehydration-responsive element-binding protein 3-like
TrEMBLA0A0D2QNZ75e-52A0A0D2QNZ7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NTC95e-52A0A1U8NTC9_GOSHI; dehydration-responsive element-binding protein 3-like
STRINGLus100258341e-164(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.18e-43ERF family protein