PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025840
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 243aa    MW: 27261.9 Da    PI: 6.5026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.7e-4071061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk++rrkC+++C++ap+fp +qp+kfa +hk+FGasnv kll++lp+  re+a+ sl yeA ar+rdPvyG+vg+i++lq +l+q + e+++++
  Lus10025840   7 PCAACKLQRRKCTQECIFAPHFPPDQPQKFADIHKVFGASNVAKLLSELPTMSREEAVISLSYEAGARIRDPVYGCVGTISELQYRLKQIHMEIDATR 104
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Lus10025840 105 QE 106
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6996107IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-407104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSHSQQPCAA CKLQRRKCTQ ECIFAPHFPP DQPQKFADIH KVFGASNVAK LLSELPTMSR  60
EEAVISLSYE AGARIRDPVY GCVGTISELQ YRLKQIHMEI DATRQELLKY MGPNNQKQDQ  120
ALMIPNLVTA SFIAPSTHHQ NQQQQQNMMM QMMGRGGHQM LEAQLMATEL NTTARGEQQQ  180
QHHEMFRVYE QREQQHNQHE VIGFSNGNGI MDDHVPNSIG FNQISIGEVE PCLALGSMDG  240
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-45711011114LOB family transfactor Ramosa2.1
5ly0_B2e-45711011114LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632478.12e-66LOB domain-containing protein 36-like
RefseqXP_021632479.12e-66LOB domain-containing protein 36-like
TrEMBLA0A2C9URI94e-65A0A2C9URI9_MANES; Uncharacterized protein
STRINGLus100258400.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.15e-54ASYMMETRIC LEAVES 2-like 1