PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025987
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 355aa    MW: 39797.1 Da    PI: 9.1619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025987genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-052873241254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  Lus10025987 287 RKEKLGDRIASLQRLVAPY-----GKTDTASVLTEAIGYIQFL 324
                  7788899*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.446275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-8285332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-11285338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-4285329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEPPNFHHPQ DQFSGYFSSL LSLPPPPPPQ PTSINSQDHH HHHHLMLSTS NSSNSSYQNY  60
HHQLIDQSSK DHDYSWPAQP PPPSLRSLMN LESFDANELL LSKIKDEMPD AFPKLRDMNI  120
YNNNNSNNNY FSSTNSGFSS EADPYHHQLY PKSHHHHVMP SINVLNSNLC SSLVSSSSSL  180
DLNLRAVDHH LNHASTPTPS HSTSTTSRNS NMQMMSQHHF MGDSPSHSSN NKTIGIEATV  240
SLGIKKSKRP ISSFSDQSSS SKNNTQADDH KKKRSTSRPS CPPLKVRKEK LGDRIASLQR  300
LVAPYGKTDT ASVLTEAIGY IQFLHDQVQT LSVPYMRSTS NNQPTRPFML RVRY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025987
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100259870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-30bHLH family protein